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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LRFN3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLPLLLCL LPLAPASSPP QPATSSPCPR RCRCQTQSLP LSVLCPGAGL LFVPPSLDRR  60
   61 AAELRLADNF IAAVRRRDLA NMTGLLHLSL SRNTIRHVAA GAFADLRALR ALHLDGNRLT 120
  121 SLGEGQLRGL VNLRHLILSN NQLAALAAGA LDDCAETLED LDLSYNNLEQ LPWEALGRLG 180
  181 NVNTLGLDHN LLASVPAGAF SRLHKLARLD MTSNRLTTIP PDPLFSRLPL LARPRGSPAS 240
  241 ALVLAFGGNP LHCNCELVWL RRLAREDDLE ACASPPALGG RYFWAVGEEE FVCEPPVVTH 300
  301 RSPPLAVPAG RPAALRCRAV GDPEPRVRWV SPQGRLLGNS SRARAFPNGT LELLVTEPED 360
  361 GGTFTCIAAN AAGEATAAVE LTVGPPPPPQ LANSTSCDPP RDGEPDALTP PSAASASAKV 420
  421 ADTVAPTDRG VQVTEHGATA ALVQWPDQRP VPGIRMYQIQ YNSSADDILV YRMIPADSRS 480
  481 FLLTDLASGR TYDLCVLAVY EDSATGLTAT RPVGCARFST EPALRPCAAP HAPFLGGTMI 540
  541 IALGGVIVAS VLVFIFVLLL RYKVHGVQPP GKAKATAPVS SVCSQTNGAL GPVPSAPAPE 600
  601 PAAPRAHTVV QLDCEPWGPS HEPAGP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle