YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM109_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAHSNPSW SRHLFKAVLM VLGALLLVHS ASAQTHREFA SPGQQKRESS ADILTEIGRS  60
   61 LKETLDTWLG PETMHVISET LLQVMWAISS AISVACFALS GIAAQLLSAL GLDGEQLTQV 120
  121 LKLSPSQVQT LLLWGAAALV IYWLLSLLLG LVLALLGRIL GGLKLVLFVA GFVGLVRSVP 180
  181 DPSTRALLLL ALLTVFALLS RLTGSRSSGT HLEAKVRGLE RQIEELRGRQ RRAAKIPRSM 240
  241 EEE

Type	Start	End	Confidence
Signal Peptide	1	33	0.94
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	85	0.95
Transmembrane Helix	86	109	0.60
Cytoplasmic	110	129	0.57
Transmembrane Helix	130	153	0.86
Non-Cytoplasmic	154	154	0.32
Transmembrane Helix	155	179	0.71
Cytoplasmic	180	185	0.42
Transmembrane Helix	186	204	0.91
Non-Cytoplasmic	205	243	0.48