YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASPH2_RAT
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLEWLVAWS WSLDGLRDCI ATGIQSVRDC DGTAVITVAC LLVLFVWYCY HVGREQPRPH  60
   61 VSVNSLLQGV DANGLQNGSM YCQSPECVRC THHDGLNQKL YHNLQEYAKR YSWSGMGRIH 120
  121 KGIREQGRYL SSQPSIQKPE VFFLPDLPTT PYFPRDAQKH DVELLERNFQ AILCEFEALY 180
  181 KAFSNCSLPQ GWKVNSTPSG EWFTFDFVSQ GVCVPRNCRK CPRTYRLLGS LRTCIGNNVF 240
  241 GNACISVLSP GTVITEHYGP TNIRIRCHLG LKTPNGCELV VGGEPQCWAE GRCLLFDDSF 300
  301 LHTSFHEGSA EDGPRVVFMV DLWHPNVAAA ERQALDFIFA PGR

Type	Start	End	Confidence
Cytoplasmic	1	31	0.52
Transmembrane Helix	32	51	0.63
Non-Cytoplasmic	52	343	0.88