YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAVS_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFAEEKTYK YIRYNHSKFC CVDVLEILPY LSCLTTSDQD RLRASYKQLG NQGTLWELFN  60
   61 TLQRRPGWVE VFIRALRICE LPGLAEQVTR VYQSYLPPGA SLHSLDPLQS PRIPTTVSEP 120
  121 SAFAAGHTIP DSGFQDKPGY PKPVQDTQPP KSPVENSEEP PQANFGAIPR MSGDSLISSP 180
  181 NPPALSPQPS REHPEQEPEL GGPSTANVDS VPIATYGPVS PTVSFQPLPR IAPRTNLSPG 240
  241 VTVSALSAKT TLSSSSTGSA FAKGAGDQAK AATCVSTKEG VPTNSVTTSS VPSIKPVPVN 300
  301 TMSSKLPIST KSTAATPSTV PTNIAPSKLP INSVYTGIVP SKVTASVAKA SASTMPPERN 360
  361 NKQAKETLEA PATVVTTGSS LTRPDISSRS LHSGPELSKP GVLVSQVDNE PFSACSMDLA 420
  421 ISPSTSLGSE PNHGPEENEY SSFRIQVDKS PSVDLLGSPE PLATQQSPEE EEPCASSVSW 480
  481 AKWLGATSAL LAAFLAVMLY RSRHLAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	479	0.98
Transmembrane Helix	480	500	0.90
Cytoplasmic	501	507	0.83