YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47576343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNTITTFI LLGLTDDPQL QIPIFMFLFF AYTLSIAGNL TIIALTILDS HLKMPMYFFL  60
   61 QNFSILEISF TSACIPRYLY NIATGDRSIT YDICVIQVFF TDVFGVTEFF LLAIMSYDRY 120
  121 VAICKPLHYV TIMNSKVCQT LVLCCWMAGL LIILPPLTLF LNLRFCDSNV IDYFFCDASP 180
  181 ILKISCSDTW LIEQLVIICA LLTFILTLVC VTLSYVHIVK TILRFPSVKQ RKKAFSTCSS 240
  241 HMIVVSITYG SCIFIYINPS AKDSVTINKG VTVLMTSIAP MLNPFIYTLR NKQVRQAFSD 300
  301 SFKKIVMISM KKKTDQI

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.74
Transmembrane Helix	24	48	0.86
Cytoplasmic	49	57	0.69
Transmembrane Helix	58	79	0.76
Non-Cytoplasmic	80	94	0.74
Transmembrane Helix	95	117	0.74
Cytoplasmic	118	136	0.87
Transmembrane Helix	137	159	0.86
Non-Cytoplasmic	160	194	0.93
Transmembrane Helix	195	218	0.91
Cytoplasmic	219	236	0.92
Transmembrane Helix	237	257	0.95
Non-Cytoplasmic	258	266	0.82
Transmembrane Helix	267	287	0.84
Cytoplasmic	288	317	0.88