YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34864287
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAVFFGCA FIAFGPALSL YVFTIATDPL RVIFLIAGAF FWLVSLLLSS VFWFLVRVIT  60
   61 DNRDGPVQNY LLIFGVLLSV CIQELFRLAY YRLLKKANEG LKSINPEETA PSMRLLAYAF 120
  121 MTLVIIMLHV FWGIVFFDGC EKNKWYILLT VLLTHLLVST QTLLSPHYEV NLVTAYIIMV 180
  181 LMGIWAFCVA GGSRRSLKLC LLCQDKDFLL YNQRSR

Type	Start	End	Confidence
Cytoplasmic	1	4	0.81
Transmembrane Helix	5	25	0.92
Non-Cytoplasmic	26	32	0.72
Transmembrane Helix	33	56	0.93
Cytoplasmic	57	66	0.81
Transmembrane Helix	67	88	0.86
Non-Cytoplasmic	89	114	0.85
Transmembrane Helix	115	136	0.93
Cytoplasmic	137	144	0.81
Transmembrane Helix	145	164	0.91
Non-Cytoplasmic	165	171	0.81
Transmembrane Helix	172	192	0.93
Cytoplasmic	193	216	0.94