YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27721715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYTLEPNVT MTDYYPDFFT TPCDTELLLR GGTLYLAVLY CILFVLGLLG NSLVILVLVA  60
   61 CKKLRSITDV YLLNLAASDL LFVLSIPFQT HNLLDQWVFG TVMCKVVSGL YYIGFFSSML 120
  121 FITLMSVDRY LAVVHPVHAI KVRTARVGTA LSLAVWLAAI AATVPLMVFY QVSSEDGMLQ 180
  181 CFQLYDEQSL RWKLFTHFEV NALGLLLPFA ILLFCYVRIL QQLRGCLNHN RTRAIKLVLT 240
  241 IVVVSLLFWV PFNVVLFLTS LHDMHILEGC ATRQRLALAT HVTEVISFMH CCVNPVIYAF 300
  301 IGEKFKKHLV DVFQKSCSHI FLYVGRQMPV GALERQLSSN QRSSHSSTLD YIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.97
Transmembrane Helix	36	59	0.93
Cytoplasmic	60	69	0.84
Transmembrane Helix	70	90	0.93
Non-Cytoplasmic	91	108	0.85
Transmembrane Helix	109	131	0.85
Cytoplasmic	132	146	0.90
Transmembrane Helix	147	169	0.89
Non-Cytoplasmic	170	199	0.90
Transmembrane Helix	200	220	0.90
Cytoplasmic	221	236	0.90
Transmembrane Helix	237	258	0.91
Non-Cytoplasmic	259	280	0.89
Transmembrane Helix	281	301	0.59
Cytoplasmic	302	353	0.64