YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56090429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPTAPPPY EDHNPLYPGR PPPGGYGQPS VLPGGYPAYP AYPQPGYGHP AGYPQPIPPV  60
   61 HPMPMNYGHD YSEEERAGSD SFGPGEWDDR KVRHTFIQKV YCIISVQLLI TVAIIAVFTF 120
  121 VEPVSEYVRS NVAVYYVSYA VFIVTYLILV CCQGPRRRFP WNIILLTIFT LALGFMTGAI 180
  181 SSMYETKAVI IAMIITAVVS ISVTIFCFQT KVDFTSCTGL ICVLGIVLAV TGAVTSVVLF 240
  241 FEYIYWLHMV YAGLGAICFT LFLAYDTQLV LGNRKHTISP EDYITGALQI YTDIVYIFTF 300
  301 VLQLVGNRD

Type	Start	End	Confidence
Cytoplasmic	1	99	0.99
Transmembrane Helix	100	121	0.94
Non-Cytoplasmic	122	131	0.90
Transmembrane Helix	132	152	0.93
Cytoplasmic	153	160	0.83
Transmembrane Helix	161	181	0.94
Non-Cytoplasmic	182	187	0.85
Transmembrane Helix	188	208	0.96
Cytoplasmic	209	216	0.84
Transmembrane Helix	217	239	0.91
Non-Cytoplasmic	240	246	0.70
Transmembrane Helix	247	265	0.95
Cytoplasmic	266	309	0.69