YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34872731, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.93
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	123	0.95
Transmembrane Helix	124	143	0.84
Cytoplasmic	144	161	0.72
Transmembrane Helix	162	182	0.87
Non-Cytoplasmic	183	206	0.90
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	236	0.90
Transmembrane Helix	237	257	0.93
Non-Cytoplasmic	258	262	0.66
Transmembrane Helix	263	282	0.88
Cytoplasmic	283	295	0.80
Transmembrane Helix	296	318	0.89
Non-Cytoplasmic	319	335	0.89
Transmembrane Helix	336	356	0.93
Cytoplasmic	357	367	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKNWLLILT LFLLKFIERS ESTVGLSAPP TVKLVNGSST NVSITLGHPL NSTLVITFEI  60
   61 TFSSKNLTIV ELPDEVIVPR GEKNASFQVT SQNIGQVTVY LHGNHSNQTC PRIQFLVIHS 120
  121 RIVSVINQVI GWIYFMAWSV SFYPQVIQNW RRKSVVGLSF DFLALNLTGF VAYSVFNIGL 180
  181 LWVPYIQEEF LLKYPNGVNP VDINDAFFSL HAVALTLIVI LQCCLYERGN QRVSRPSIGF 240
  241 LVLAWLFILV TMIVAAVGVT TWLQFLFCFS YIKLIITLIK YFPQAYMNFY YKSTKGWSIG 300
  301 GVLLDFTGGS FSLLQMFLQS YNNDQWTLIF GDPTKFGLGV FTIFFDIVFF IQHFYLYRKK 360
  361 PGYDQLD