YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47271356, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	30	0.99
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	152	0.99
Transmembrane Helix	153	175	0.94
Cytoplasmic	176	185	0.81
Transmembrane Helix	186	207	0.92
Non-Cytoplasmic	208	218	0.91
Transmembrane Helix	219	237	0.90
Cytoplasmic	238	397	0.81
Transmembrane Helix	398	419	0.91
Non-Cytoplasmic	420	424	0.65
Transmembrane Helix	425	445	0.88
Cytoplasmic	446	461	0.78
Transmembrane Helix	462	485	0.87
Non-Cytoplasmic	486	492	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLLHPAF QSCLLLTLLG LWRTTPEAHA SSLGAPAISA ASFLQDLIHR YGEGDSPTLQ  60
   61 QLKALLNHLD VGVGRGNVTQ HVQGHRNLST CFSSGDLFTA HNFSEQSRIG SSELQEFCPT 120
  121 ILQQLDSRAC TSENQENEEN EQTEEGRPSA VEVWGFGFLS VSLINLASLL GVLVLPCTEK 180
  181 AFFSRVLTYF IALSIGTLLS NALFQLIPEA FGFNPLEDYY VSKSAVVFGG FYLFFFTEKI 240
  241 LKILLKQKNE HHHGHSHYAS ESLPSKKDQE EGVMEKLQNG DLDHMIPQHC SSELDGKAPM 300
  301 VDEKVIVGSL SVQDLQASQS ACYWLKGVRY SDIGTLAWMI TLSDGLHNFI DGLAIGASFT 360
  361 VSVFQGISTS VAILCEEFPR ELGDFVILLN AGMSIQQALF FNFLSACCCY LGLAFGILAG 420
  421 SHFSANWIFA LAGGMFLYIS LADMFPEMNE VCQEDERKGS ILIPFIIQNL GLLTGFTIMV 480
  481 VLTMYSGQIQ IG