YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GFRAL_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVFIFLAVT LSSENESSSQ TNDCAHLIQK CLIDANGCEQ SWRSMEDTCL TPGDSCKINN  60
   61 SLHCNLSIQA LVEKNFQFKE CLCMDDLHCT VNKLFGKKCT NKTDNMEKDN KDKWNLTTTP 120
  121 FYHGFKQMQS CLEVTEACVG DVVCNAQLAL YLKACSANGN LCDVKHCQAA IRFFYQNMPF 180
  181 NTAQMLAFCD CAQSDIPCQQ SKETLHSKPC ALNIVPPPTC LSVIHTCRND ELCRTHYRTF 240
  241 QTECWPHITG KCHEDETCIS MLGKQDLTCS GSESCRAAFL GTFGTVLQVP CACRGVTQAE 300
  301 EHVCMIFQHM LHSKSCFNYP TPNVKDISSY EKKNSKEITL TGFNSFFNGE LLYVVVCMAV 360
  361 TCGILFLVML KLRIQSEKRD PSSIEIAGGV IIQ

Type	Start	End	Confidence
Signal Peptide	1	19	0.85
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	350	0.99
Transmembrane Helix	351	370	0.96
Cytoplasmic	371	393	0.95