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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSH5_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRATPGRT PPGPGPGVPS ASFSSPQPAM AAPGGIEEED EEEPAEIHLC VLWSSGYLGI  60
   61 AYYDTSDSTI HFMPDAPDHE SLKLLQRVLD EINPQSVVTS AKQDEAMTQF LGKLASQEHR 120
  121 EPKRPEIILL PSVDFGPEIS KQRLLSGNYS FISESMTATE KILFLSSIIP FDCVLTVRAL 180
  181 GGLLKFLSRR RVGVELEDYS VGVPILGFKK FVLTHLVSID QDTYSVLQIF KSESHPSVYK 240
  241 VASGLKEGLS LFGILNRCRC RWGQKLLRLW FTRPTRELRE LNSRLDVIEF FLMPQNLDMA 300
  301 QMMHRLLSHI KNVPLILKRM KLSHTKVSDW QVLYKTVYSA LGLRDACRSL PQSIQLFRDI 360
  361 TQEFSDDLHH IASLIGKVVD FEESLAENRF TVLPNIDPEI DAKKRRLMGL PSFLTEVAQK 420
  421 ELENLDSCIP SCSVIYIPLI GFLLSIPRLS FMVEASDFEI EGLDFMFLSE DKLHYRSART 480
  481 KELDALLGDL HCEIRDQEML LMHQLQCQVL ARAPVLTRVL DLASRLDVLL ALASAARDYG 540
  541 YSRPHYSPCI QGVRIKNGRH PLMELCARTF VPNSTDCGGD QGRVKVITGP NSSGKSIYLK 600
  601 QVGLITFMAL VGSFVPAEEA EIGVIDAIFT RIHSCESISL GLSTFMIDLN QVAKAVNNAT 660
  661 EHSLVLIDEF GKGTNSVDGL ALLTAVLRHW LALGPSCPHI FVATNFLSLV QLQLLPQGPL 720
  721 VQYLTMETCE DGNDLVFFYQ LCHGVASASH ASYTAAQAGL PDPLIARGKE VSDSIRSGKP 780
  781 VKPMHELVRR TQMENCQALV DKFLKLDLED PSLDLDIFIS QEVLPAATTI L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle