YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022449, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKNQTIIT EFLFLGLTDH LHQKIALFIT LLFVYLVTLG GNLGMITLIW VDPRLHTPMY  60
   61 FFLSHLSFVD LCSSSSIAPK MLCDIFAKKK KISFMGCAAQ MWFFGFFVGT ECFLLASMAY 120
  121 DRYTAICKPL LYTLLMSQRV CVHLVVGPYA FAIINITTHT TLTFCLPFCG SNTINHFFCD 180
  181 VSPLFSLACA DSWINKVVLF VFSGAIGVFS GLIIIVSYVS ILMTILKIQT ADGKRKAFST 240
  241 CSSHLAAVSI LYGTLFFIYV RPSASFSLNI NKMISLFYTV VIPMLNPLIY SLRNKEVKGA 300
  301 FRRKVQRKHF PAGM

Type	Start	End	Confidence
Cytoplasmic	1	26	0.88
Transmembrane Helix	27	50	0.88
Non-Cytoplasmic	51	60	0.76
Transmembrane Helix	61	82	0.70
Cytoplasmic	83	97	0.62
Transmembrane Helix	98	120	0.83
Non-Cytoplasmic	121	139	0.60
Transmembrane Helix	140	162	0.72
Cytoplasmic	163	163	0.23
Transmembrane Helix	164	179	0.45
Non-Cytoplasmic	180	199	0.62
Transmembrane Helix	200	222	0.89
Cytoplasmic	223	239	0.80
Transmembrane Helix	240	260	0.92
Non-Cytoplasmic	261	273	0.84
Transmembrane Helix	274	294	0.88
Cytoplasmic	295	314	0.95