YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47577417, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHNNTVSEF IMLGFTTDPV MQKVLFAVFL IVYTLTLIGN CSLIMLICND SRLHTPMYFF  60
   61 IGNLSFLDLG LSSVYTPKIL ATCISEDKSI SFAGCVTQFF FSAALDYTEC YLLAAMAYDR 120
  121 YVAISKPLLY SQAMSLKLCV FFVAASYLGG FINSVIITKD TFALTFCSDN VIDDFFCDIP 180
  181 PLVKLACGKK DSFQSVLFFL LTSNVIIPIV FILATYLFII ATILRIRSTQ GRLKAFSTCS 240
  241 SHLISVTLYY GSILYIYARP RSSYSLDRDK IVSTFYTVVF PMLNPLIYSL RNKDVKEALN 300
  301 KLLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.59
Transmembrane Helix	24	47	0.89
Cytoplasmic	48	133	0.56
Transmembrane Helix	134	157	0.83
Non-Cytoplasmic	158	204	0.90
Transmembrane Helix	205	224	0.92
Cytoplasmic	225	235	0.83
Transmembrane Helix	236	258	0.79
Non-Cytoplasmic	259	271	0.84
Transmembrane Helix	272	290	0.44
Cytoplasmic	291	304	0.54