YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4585277, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKPADEHHF TMETSGMHLV GFWLHVLLLF QLSGLGDSAS KDIVCEPITV PMCKGIGYNH  60
   61 TYMPNQFNHD NQDEVGLEVH QFWPLVRIHC SPDLLFFLCS MYTPICLQDY KKPLPPCRSV 120
  121 CERAKRGCSP LMIQYGFEWP ERMSCEQLPM LGDTDRLCMD RNSSETTTLS PPFPKPTPKG 180
  181 TPRHRATAKS APPQKCDREC HCRGPLVPIK KEAHPLHNRV NTGSLPNCAL PCHQPYFSQD 240
  241 ERTFTTFWIG LWSVLCFVST FTTVATFLID MERFKYPERP IIFLAACYLF VSLGYIVRLL 300
  301 AGHERVACEG TGDQQHILYD TTGPALCTLV FLLIYFFGMA SSIWWVVLSF TWFLAAGMKW 360
  361 GNEAIAGYSQ YFHLAAWLVP SVKSIAVLAL SSVDGDPVAG ICYVGNQSLE GLRGFVLAPL 420
  421 VVYLFTGSLF LLAGFVSLFR IRSVIKQGGT KTDKLEKLMI RIGLFTVLYT VPATIVVACL 480
  481 VYEQHYSPSW ERALACSCPS ERQRLGMGPD YAVFMLKYFM CLVVGITSGV WIWSGKTLES 540
  541 WRRFIARYVP CRTRKPPVSA SSMYSEASTA LTARAGTAPT GTYHKSAPSS HV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.53
Transmembrane Helix	14	29	0.57
Non-Cytoplasmic	30	246	0.86
Transmembrane Helix	247	269	0.94
Cytoplasmic	270	279	0.81
Transmembrane Helix	280	301	0.91
Non-Cytoplasmic	302	330	0.75
Transmembrane Helix	331	354	0.85
Cytoplasmic	355	370	0.70
Transmembrane Helix	371	390	0.80
Non-Cytoplasmic	391	415	0.91
Transmembrane Helix	416	439	0.89
Cytoplasmic	440	459	0.90
Transmembrane Helix	460	481	0.94
Non-Cytoplasmic	482	513	0.96
Transmembrane Helix	514	535	0.93
Cytoplasmic	536	592	0.98