YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859491, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSEAMKVC MALVIFSLAL VGHGAAELGV SADHQNRTAR QMTCLENHEY PHNGFCCKNC  60
   61 EAGTYVKEKC TSGHVMGKCS PCEKGTYAEH PTGMEQCLQC SQCHRDQTVV AECTSTSNTK 120
  121 CDCKFGTFCL PDEPCEVCKK CTKCKADEEE VSGCTPTSNT KCRRRPSYPT EGPTEKPSAS 180
  181 NSTGTIFVIV SILILLVICT IVGAILFLKR RQRQQSETNG NLEEVKVPID ECPRSEEEQE 240
  241 NSRNAGLEKE EEHRPESRPL LTQETQETGS KSIPVEDEDR GLGDSLPKHN QLFPKPSLSA 300
  301 LPQNHWGFTV DPAPRPRDRP TEIRLNHGHG KDDPPRKLLP LLGEEESLSK SFDLFDSLDV 360
  361 RYHNKFFRSI GVSDNSIKLA ETQQPMDKVY DLLRVWMQKE GLRANINTLL QALLDLDQRY 420
  421 SAEHIASKAV ERGYYKYE

Type	Start	End	Confidence
Signal Peptide	1	26	0.95
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	184	0.98
Transmembrane Helix	185	208	0.93
Cytoplasmic	209	438	0.99