YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859171, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVDVYNV SSDLSLQGFD LSPEKAIIAF FFAIVNYIII LLCNSYLLFT IISNKALHEP  60
   61 MHILLLNLPI NDLIGSTCLF PHVMRELLFD TRTMSFSVCI TQAFFIHVYA VSTVFILTAM 120
  121 AYDRYVAICQ PMRYTTIMTN VHLAKIISLV WLSNLTLMAV LFILLLRLPR CRSFLNHPYC 180
  181 DNPSLLQLVC ADTTINNIYG LLMTAVCQAF TVGLIIYSYL HILIACFRNK RSDTRSKALQ 240
  241 TCGTHLVVFV LFECLGLFTI ISYRIKDISI HLRKFIAVAA MILPPTVNPV IYGLRTKEIR 300
  301 VKGIKFFHRK VFVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.76
Transmembrane Helix	26	50	0.89
Cytoplasmic	51	62	0.68
Transmembrane Helix	63	84	0.79
Non-Cytoplasmic	85	102	0.81
Transmembrane Helix	103	126	0.85
Cytoplasmic	127	145	0.79
Transmembrane Helix	146	166	0.94
Non-Cytoplasmic	167	200	0.85
Transmembrane Helix	201	223	0.87
Cytoplasmic	224	240	0.87
Transmembrane Helix	241	263	0.90
Non-Cytoplasmic	264	274	0.75
Transmembrane Helix	275	294	0.88
Cytoplasmic	295	314	0.90