YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859175, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFTNITVFT EFYLLGFPEL HPDYYGAVGT LFLFVYLTLL GGNIFIIAFI AYEKSLQKPT  60
   61 YVIFCNLAVC DLTFGTVVLP QAIAMYFINI NTISFNGCFV QMFFVHYLGS VSSLIILIMT 120
  121 IDRIVAIHNP FRYCVLITNK TIFIACGVIW TAITPLMAII VYEAYDEPYC ATNVVTQIFC 180
  181 ERNVVIKLSC RDVRQKLLLT LAWALIVVLG PSLFVLFSFI AIFMFVFNIS DNQTRYKTLS 240
  241 TCTPQLFIIC LYFVPKFVLY VYDITVALSP SFRIALSLCF CFVPPVVNPM IYCFKTKEIK 300
  301 DALEMKIRHA SVNQVML

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.94
Transmembrane Helix	27	51	0.87
Cytoplasmic	52	61	0.86
Transmembrane Helix	62	84	0.92
Non-Cytoplasmic	85	102	0.86
Transmembrane Helix	103	121	0.95
Cytoplasmic	122	140	0.72
Transmembrane Helix	141	161	0.88
Non-Cytoplasmic	162	202	0.95
Transmembrane Helix	203	227	0.89
Cytoplasmic	228	240	0.78
Transmembrane Helix	241	260	0.83
Non-Cytoplasmic	261	271	0.72
Transmembrane Helix	272	294	0.82
Cytoplasmic	295	317	0.94