YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6739472, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSVTPRVM TFTNITVFTE FYLLGFPGLH PDYYGALGTL FLFVYLTLLG GNIFIIAFIA  60
   61 YEKSLQKPTY VIFCNLAVCD LTFGTVVLPQ AIAMYFININ TISFNLCFVQ MFFLICLSNV 120
  121 SSLIILLMTI DRFVAIRNPL RYCVLITNKT VFIACGVIWT FITPLMAFIV YQSYDEPYCA 180
  181 SNVVTQILCE RNVVIKLSCR DVRQKLYLTF ACTVIIVVGP PIFILCSFIG IFTSVFNISD 240
  241 SQARYKTFST CFPQLFLICL HFLSKLVVYV YDVTVTMPPS FRIAISLCSC LLPPVVNPMI 300
  301 YCFKTKEIKH AIKMKMRHKI VSMPVKMM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	29	0.85
Non-Cytoplasmic	30	36	0.80
Transmembrane Helix	37	61	0.88
Cytoplasmic	62	70	0.89
Transmembrane Helix	71	93	0.91
Non-Cytoplasmic	94	107	0.82
Transmembrane Helix	108	130	0.91
Cytoplasmic	131	149	0.79
Transmembrane Helix	150	170	0.87
Non-Cytoplasmic	171	213	0.92
Transmembrane Helix	214	236	0.89
Cytoplasmic	237	247	0.82
Transmembrane Helix	248	269	0.83
Non-Cytoplasmic	270	280	0.82
Transmembrane Helix	281	303	0.88
Cytoplasmic	304	328	0.94