YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859185, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENYTFNSII LQLEGLRVSE EATYPVFVFF LLFYVAIMVL NIGIFIVITT HRSLHEPMYM  60
   61 LFCNLPINDI LGNSIMVPRL LMDILKSPSQ RYISYVECVV QAFSTHTYGT TSHTILIIMA 120
  121 IDRYVAICNP LRYQTIMTNK TVITLSALAW GIALLFISIL IGLTLRLSRC RTFISNPFCD 180
  181 NASLFKLSCE DVTINNLYGL IYTVLLFGSS MGSIAVTYIK ITAVCLVTKS KMLNSRALKT 240
  241 CSTHLSLYLI MLISGLIIIV LHRFPAYSDY RKIASLLFHI IPSILNPIIY GVQSSEVRHV 300
  301 LIQVLSFKKR RAVKDV

Type	Start	End	Confidence
Cytoplasmic	1	25	0.55
Transmembrane Helix	26	49	0.91
Non-Cytoplasmic	50	59	0.48
Transmembrane Helix	60	77	0.39
Cytoplasmic	78	141	0.56
Transmembrane Helix	142	165	0.88
Non-Cytoplasmic	166	200	0.89
Transmembrane Helix	201	224	0.85
Cytoplasmic	225	243	0.83
Transmembrane Helix	244	264	0.92
Non-Cytoplasmic	265	272	0.81
Transmembrane Helix	273	292	0.76
Cytoplasmic	293	316	0.75