YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859387, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.87
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	208	0.99
Transmembrane Helix	209	231	0.91
Cytoplasmic	232	242	0.81
Transmembrane Helix	243	262	0.95
Non-Cytoplasmic	263	294	0.93
Transmembrane Helix	295	318	0.89
Cytoplasmic	319	336	0.93
Transmembrane Helix	337	357	0.93
Non-Cytoplasmic	358	379	0.92
Transmembrane Helix	380	399	0.92
Cytoplasmic	400	428	0.86
Transmembrane Helix	429	450	0.92
Non-Cytoplasmic	451	500	0.95
Transmembrane Helix	501	522	0.80
Cytoplasmic	523	822	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKRPCSIV GSFWMLWIWT ATSMVARAVI LHPNETIFND FCKKSTTCEV LKYNTCLGSP  60
   61 LPYTHTSLIL AEDSETQEEA FEKLAMWSGL RNAPRCWAVI QPLLCAVYMP KCENGKVELP 120
  121 SQHLCQATRN PCSIVERERG WPNFLKCENK EQFPKGCQNE VQKLKFNTSG QCEAPLVKTD 180
  181 IQASWYKDVE GCGIQCDNPL FTEDEHSDMH SYIAVFGTIT LLCTFLHLAT FLADWKNSNR 240
  241 YPAVILFYVN ACFFIGSIGW LAQFMDGARN EIVCKSDNTM RLGEPSSTET LSCVIIFVIV 300
  301 YYSLMSGVIW FVMLTYAWHT SFKALGTTHQ PLSGKTSYFH LVTWSIPFIL TVAILANSQV 360
  361 DADSVSGICF VGYRYYEYRA GFVLAPIGFV LVIGGYFLIR GVMTLFSIKS NHPGLLSEKA 420
  421 ASKINETMLR LGIFGFLAFG FVLITFGCHF YDFFNQAEWE RSFREYVLCE ANVTIAHQTN 480
  481 KPIPECAIKN RPSLLVGKIN LFSMFGTGIA MSTWVWTKAT ILIWKRTWFR IIGRSDDEPK 540
  541 RIKKSKMIAK AFSKRKELQK DPEKELSFSM HTVSHEGPVA GINFDLNEPS IEMSSAWAQH 600
  601 VTKMVARRGA ILPQDISVTP TGTPIPPPEE RNKLWMVEAE ISPEMMKRKK KKKKRRKEVR 660
  661 PAGPAADEGN PAYHRREFGP SAVPRLPKLP GHRSLVANLW EQQRQQQEEQ DMLPGAFPEF 720
  721 RPSCPLPYQD RYGGLGYLRN KPSSLPLANP LTLRDSMQGD LSHFQQSSWQ PKGVFRHLGQ 780
  781 EASMMDVGRT AVVPRADGRR GVQIHSRTNL MDAELLDADS DF