YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38649117, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.96
Transmembrane Helix	17	38	0.90
Non-Cytoplasmic	39	80	0.94
Transmembrane Helix	81	103	0.88
Cytoplasmic	104	114	0.73
Transmembrane Helix	115	134	0.95
Non-Cytoplasmic	135	140	0.85
Transmembrane Helix	141	159	0.94
Cytoplasmic	160	169	0.69
Transmembrane Helix	170	187	0.83
Non-Cytoplasmic	188	204	0.69
Transmembrane Helix	205	226	0.83
Cytoplasmic	227	235	0.78
Transmembrane Helix	236	257	0.93
Non-Cytoplasmic	258	266	0.79
Transmembrane Helix	267	286	0.92
Cytoplasmic	287	296	0.93
Transmembrane Helix	297	320	0.88
Non-Cytoplasmic	321	360	0.93
Transmembrane Helix	361	379	0.85
Cytoplasmic	380	385	0.64
Transmembrane Helix	386	408	0.72
Non-Cytoplasmic	409	409	0.32
Transmembrane Helix	410	430	0.80
Cytoplasmic	431	455	0.55
Transmembrane Helix	456	478	0.81
Non-Cytoplasmic	479	705	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLGFLRLS YEKQDTLLKL LILSMAAVLS FSTRLFSVLR FESVIHEFDP YFNYRTTRFL  60
   61 AEEGFYKFHN WFDDRAWYPL GRIIGGTIYP GLMITSAALY HVLHFFHITI DIRNVCVFLA 120
  121 PLFSSFTAIV TYHFTKELKD AGAGLLAAAM IAVVPGYISR SVAGSYDNEG IAIFCMLLTY 180
  181 YMWIKAVKSG SIYWSSMCAL AYFYMVSSWG GYVFLINLIP LHVLVLMLTG RFSHRIYVAY 240
  241 CTVYCLGTIL SMQISFVGFQ PVQSSEHMAA FGVFGLCQIH AFVDYLRSKL NAQQFEVLFR 300
  301 SVISLVGIIL LSVGGLLMLT GKISPWTGRF YSLLDPSYAK NNIPIIASVS EHQPTTWSSY 360
  361 YFDLQLLVFM FPVGLYYCFN NLSDATIFII MYGVTSMYFS AVMVRLMLVL APVMCILSGI 420
  421 GVSQVLTTFM KNLDVSRPDK KTKKQQDSTY PIKNEVASGM ILVMAFFLIT YTFHSTWVTS 480
  481 EAYSSPSIVL SARGGDGSRI IFDDFREAYY WLRHNTPEDA KVMSWWDYGY QITAMANRTI 540
  541 LVDNNTWNNT HISRVGQAMA STEEKAYEIM RELDVSYVLV IFGGLTGYSS DDINKFLWMV 600
  601 RIGGSTDTGR HIKEHDYYTP TGEFRVDREG SPVLLNCLMY KMCYYRFGQV YTEAKRPPGY 660
  661 DRVRNAEIGN KDFELDVLEE AYTTEHWLVR IYKVKDLDNR GLSRT