YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34784083, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPPPKPWE RRIPGTITAP LNYRSTDFGS VSQSGPSGSG PPVLTRVVPP IPPRPVRQSY  60
   61 RPTYSSFPSS YSPYGNSMYG GYSPYSYSGY GVGGGLGYNR FNTMDEIPPS RFVQQAEESS 120
  121 RGAFQSIESI VHAFSSVSMM MDATFSAVYN SFRAVLDVAN HFSRLRIHFT KVLSAFALVR 180
  181 TLRYLYRRLQ RLMGLRQGSE VDDLWADSAA SSSVVSASGA RGAGVEEPGV NSVKSWPIFL 240
  241 FFAVVLGGPY LIWRLLSSAE GAEENATNWA SGEDDHVVAR VEYDFTAASE EEISVQAGDM 300
  301 LNLAPKEQQP RVRGWLLASV DGQTTGLVPA NYVKVLGRRR GRKHAELERM AQAQEPAQNL 360
  361 PAPQTALITA SVPTTTHSED LLESVYGETQ GLGLEVQAST HNSRDTLVMH SEKMDL

Type	Start	End	Confidence
Cytoplasmic	1	129	0.65
Transmembrane Helix	130	149	0.56
Non-Cytoplasmic	150	166	0.75
Transmembrane Helix	167	184	0.61
Cytoplasmic	185	234	0.48
Transmembrane Helix	235	253	0.78
Non-Cytoplasmic	254	416	0.51