YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207845, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACAPNRVRL LCMLSLTFGF FIVEVVVSRI TSSLAMLSDS FHMLSDVIAL VVALVAVRFA  60
   61 EQTQSTNKNT FGWIRAEVMG ALVNAVFLTA LCFTIILEAI ERFTEPHEIE QPWVVIGVGA 120
  121 LGLLVNLLGL CLFHGHAGGG GHGHSHGGHG HSHGGAKKHK NGKVRRSETL EDSRSAGEET 180
  181 NNLVANHNSP NGVNAERKAA DMCHSDSLDL QINGSAPYDE LENGHDAASQ LNMRGVFLHV 240
  241 LGDALGSVIV VINAIIFVFV WKPCEPGTIC ENPCSGQHCA DHALNISSPL TNGTLIKAGP 300
  301 CWVLYLDPTL CIIMVCILLY TTYPLLKESA LILLQTVPKQ IDMHQLNARL RDLEGVLAVH 360
  361 ELHIWQLAGS RIIATAHIKC HDPTSYMDVA KRIKDFFHDE GIHATTIQPE FVTVNSESRA 420
  421 SLCELSCRTQ CAPKLCCGAV DTAKPLEGSL ESKKSCESKT PTLPSASVTS LEIISESVED 480
  481 TSRPESVVII TREVESSL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	31	0.90
Non-Cytoplasmic	32	40	0.77
Transmembrane Helix	41	60	0.90
Cytoplasmic	61	77	0.83
Transmembrane Helix	78	100	0.88
Non-Cytoplasmic	101	112	0.86
Transmembrane Helix	113	135	0.91
Cytoplasmic	136	236	0.91
Transmembrane Helix	237	259	0.90
Non-Cytoplasmic	260	302	0.86
Transmembrane Helix	303	323	0.85
Cytoplasmic	324	498	0.83