YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27881972, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.60
Transmembrane Helix	37	59	0.81
Non-Cytoplasmic	60	68	0.52
Transmembrane Helix	69	91	0.89
Cytoplasmic	92	98	0.50
Transmembrane Helix	99	123	0.89
Non-Cytoplasmic	124	159	0.53
Transmembrane Helix	160	176	0.52
Cytoplasmic	177	185	0.61
Transmembrane Helix	186	207	0.80
Non-Cytoplasmic	208	217	0.84
Transmembrane Helix	218	240	0.88
Cytoplasmic	241	286	0.91
Transmembrane Helix	287	307	0.76
Non-Cytoplasmic	308	309	0.55
Transmembrane Helix	310	335	0.75
Cytoplasmic	336	350	0.76
Transmembrane Helix	351	373	0.83
Non-Cytoplasmic	374	382	0.76
Transmembrane Helix	383	404	0.96
Cytoplasmic	405	465	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTFRSQTL SKDDVNYRMH FRMINEQQVE DITIQFFYKP HTISLLTVTV LSLMYFAFTR  60
   61 DDGDPDSNLR VGLILLVSFF LVISVLAFPN GPFTRPHPAI WRIVFGLSVL YFLFLVFIIF 120
  121 LNWDQVKALM FWLDPNLRYA KREADVMEYA VNCHVITWER ILSHFDIFAF SHFWGWGMKA 180
  181 LLIRSYGLCW TISITWELTE LFFMHLLPNF AECWWDQVIL DILLCNGGGI WLGMTVCRFL 240
  241 EMRTYHWASI KDIHSTTGKI KRAVLQFTPA SWTYVRWLDP KSSLQRVMGV YLFMIIWQLT 300
  301 ELNTFFLRHI FVFPACHALS WCRILFIGII TAPTVRQYYA YLTDTQCKRV GTQCWVFGAI 360
  361 AFLEALACIK FGQDLFSKTQ ILYVILWLVC LAFITFLCLY VMVWYAENYG PRQKSFSECE 420
  421 DSIYSEAGDS VTECKGEFEI DSTTSCSTRK RRDSGDSRTI NGMEK