YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45501274, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	33	0.85
Non-Cytoplasmic	34	46	0.76
Transmembrane Helix	47	74	0.75
Cytoplasmic	75	83	0.78
Transmembrane Helix	84	102	0.77
Non-Cytoplasmic	103	122	0.63
Transmembrane Helix	123	143	0.85
Cytoplasmic	144	225	0.91
Transmembrane Helix	226	248	0.88
Non-Cytoplasmic	249	274	0.86
Transmembrane Helix	275	297	0.88
Cytoplasmic	298	333	0.93
Transmembrane Helix	334	352	0.92
Non-Cytoplasmic	353	367	0.87
Transmembrane Helix	368	387	0.93
Cytoplasmic	388	417	0.95
Transmembrane Helix	418	437	0.87
Non-Cytoplasmic	438	459	0.80
Transmembrane Helix	460	489	0.79
Cytoplasmic	490	499	0.74
Transmembrane Helix	500	521	0.81
Non-Cytoplasmic	522	541	0.73
Transmembrane Helix	542	562	0.93
Cytoplasmic	563	573	0.66
Transmembrane Helix	574	591	0.55
Non-Cytoplasmic	592	596	0.42

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPAKFSKKL WCARQQLILV LAPLLLLPLL FVVPPKEGKC LYVVLLMAVY WCTEALPLAV  60
   61 TAMLPVCLFP TMGILPSKKV CPQYFLETNF LFLSGLVMAS AIEEWGLHRR IALKVLKIVG 120
  121 VKPAWLILGM MITSSFLSMW LSNTATTAMM LPIANAILES LFGNLETLKE NCKTRSDPEG 180
  181 DSQVKMHVLP EKQILTVEDR PDWTDRSEQR NQEEVRREAE YQMKVWKGFL ICIPYAASIG 240
  241 GTATLTGTAP NLILVGQLKS YFPECDLVNF GSWFVFAFPL MLLFLILGWI WIAFLYGGLN 300
  301 TRLCISKNDE RAAAEAKANA VIDEDYKKLG PIKFAEGSIA FFFIIFAILL FTRDPKFVTG 360
  361 WSVFFPKGYV SDAVTGVIII SILFFFPSQR PSLRWWFDSR ASNTPYVPLL SWRKAQECVP 420
  421 WNIILLLGGG FAMAKGCEES GLAVWIGNHL QPLAQVPPPV AVMLITAFIA CFTEFASNTA 480
  481 TIIIFLPVIA ELAIRVKVNP LYFMIPATTG CSYAFMLPVS TPPNSIAFAS GHLMVKDMVK 540
  541 TGFVMNILGI LCVSLAMNTW ALHMFNLHLY PDWARPLNAS LATVATHTVA AMNMTG