YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFVGGAVK KFLAFNIGAM PSVVVWLGAT LLVERLCALC MPAVLARLVL CVCCWLYFTW  60
   61 ATPKPSLPVE DKAVFITGCD SGFGNATAKK LDAMGFEVFA TVLNLEGEGA KHLRKVCSSR 120
  121 LTLLQVDITQ PQQVQQALLD TKAKLGIRDL WGLVNNAGWC VNIGDAELSL MSNYRGCMEV 180
  181 NFFGTVTVTR TFLPLLRQSK GRIVTISSPS GEHPFPCLAS YGASKAALNL FINTLRHELD 240
  241 PWGVKVSTIL PSAYKTGQSS NAEYWEKQYK SLLQGLSPNL LEEYGEEYLL ETKELFQNYA 300
  301 KTANEDLSPV IDTIVEALLS PQPQVRYYAG PGLILMYFIC SYLPLSISDR FLQKLFVQKK 360
  361 VMPRALIKQQ GLSPNDNNNS IKENMNDSSS NNSNFTKCID

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.58
Transmembrane Helix	12	33	0.87
Cytoplasmic	34	38	0.53
Transmembrane Helix	39	61	0.82
Non-Cytoplasmic	62	326	0.68
Transmembrane Helix	327	346	0.64
Cytoplasmic	347	400	0.52