YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27882119, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFLDGIRC GDCECNVDWG EKRNTIASIA AGVLFFTGWW IIIDAAIMYP KEEQFHHAYH  60
   61 TCGVIATIAF LMINAVSNGQ VRGDSYSEGC LGQTGARIWL FIGFMLAFGS LIASMWILFG 120
  121 GFVVTGTEHK DLSVYPGIAV FFQNAFIFFG GLVFKFGRTE DLWQ

Type	Start	End	Confidence
Cytoplasmic	1	25	0.95
Transmembrane Helix	26	48	0.88
Non-Cytoplasmic	49	55	0.89
Transmembrane Helix	56	77	0.93
Cytoplasmic	78	97	0.89
Transmembrane Helix	98	119	0.95
Non-Cytoplasmic	120	133	0.83
Transmembrane Helix	134	156	0.88
Cytoplasmic	157	164	0.88