YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32765853, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLIVEGGR LLCLMFWLNL VPVINSCPAK CVCYSEPKAT VACQQQGLFS IPTEIPVRSQ  60
   61 RIFLQSNKLT VVRSTSFSSV HNLTVLWMYS NNISHIEAGA FYGLERLEEL DIGDNSNLRI 120
  121 ISPTAFRGLT KLHTLHLHRC GLSELPVGVF RGLFSLQYLY LQDNNLLALH EDTFLDLANL 180
  181 TYLFLHNNKI KVVTDHMLRG LVNLDRLLLH QNRIVHVQQQ AFNDLSKLTT LFLFFNNLTM 240
  241 LTGESMNPLV SLQYLRLNGN QWICDCRARP LWDWFKRFKG SSSDLECHLP ASLNGKDLKR 300
  301 LKSDDLEGCV DSPSQVQTSI FNSKVHSGKF LSLDDPLVES IPRCCLSDND KSSIISSKSI 360
  361 PDPSSYNSRQ ITNNPLKEKE NISKTKFREV ERTKNETRNK QSLNDGPLGT MSNNLDQSLD 420
  421 RIDPELLGNL EPSTAPTKKK KKCSKKPKSD QNCLKGHGST IQVLAVIFLP LFWLSLALS

Type	Start	End	Confidence
Signal Peptide	1	29	0.81
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	457	0.95
Transmembrane Helix	458	477	0.58
Cytoplasmic	478	479	0.49