YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41056221, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	197	0.99
Transmembrane Helix	198	221	0.92
Cytoplasmic	222	233	0.91
Transmembrane Helix	234	255	0.90
Non-Cytoplasmic	256	284	0.84
Transmembrane Helix	285	308	0.85
Cytoplasmic	309	322	0.89
Transmembrane Helix	323	345	0.93
Non-Cytoplasmic	346	368	0.93
Transmembrane Helix	369	392	0.92
Cytoplasmic	393	411	0.96
Transmembrane Helix	412	436	0.88
Non-Cytoplasmic	437	475	0.95
Transmembrane Helix	476	495	0.94
Cytoplasmic	496	617	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLLCLCVL LLLDSCVSHT LFTCEPVQVQ WCLDMPYNTT FFPNMLEHYD QDIAAVRMKE  60
   61 FMPLVSVRCS PDAHLFLCQA FVPECRTHSH SQTHTHVLRP CRERCERVRS DCRAVMHTFD 120
  121 ISWPSELQCE RLESCGGSAV DVTTAGRSGA GSSPRDLGFW CPLQLKLRPG QSGSFLGAPD 180
  181 CAPPCENMFL TAAEQHLARL FIGVCSVVCL CATLFTFLTF LMDAQRFRYP ERPIVFISVC 240
  241 YCAVSLLYLL GFMLGPSVAC GAPGRPGGVW TVVLGARSRG CSLLFTLLYF CSTAGMLWWV 300
  301 ILTITWFLAA GPKWSCEAIQ KQALWFHAAG WGVPAVLTLL LLALGKVEGD GISGVCFTGL 360
  361 YDLTALRWFL VAPLALAVLL GLALLLAGIV ALNRVRQVIQ HDQLNQQKLK RFMIRIGVFS 420
  421 GLYLLPLLLL LGCYLYEMTQ RRVWESSWVN RHCQEFSIPC ARTSSGGVQH PGLSLFLLKY 480
  481 LMTLAVGIPA VFWVSSRKTC SRWASFCRRA HKKDAVSESR RVLQESCEFF LKHNSRPQQS 540
  541 RSSLRLKVLS KSMGTSTGTP ASCAPPPAAS LDHTAASSDT DRHSRADASS RISSRSTSKG 600
  601 DKPKAPPTSP TANEMSG