YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40786515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKIFFPQC CNTADSGLLV GRWIPGHNSA VVLAVVHYPF IPGQVKKYLS EIQSQTQVDL  60
   61 AVLGSWSMPK EGQEGLDSFL KDLSTIFPQK CWLQLSREIG KRGFTCRVVQ NNGTLLQDKE 120
  121 QKSDVDGSEE DKIILVHYDQ RKVMLSQLHP VQEADQKSEI EPSELRLVFQ TVAQSQPLFF 180
  181 LDKYDDGPLK LTHWQSEGRE ASIIAELLKQ ASVPVCICLT WLLSLWLWFC SFRILNIPPV 240
  241 KFITSKLSTC VQSGYRAVHF KTVFSPKKAD THMDFMRKAN IFVSFLVDIA LGLLLISWLY 300
  301 RENRISKLAN TLVPVADHVA KELQQLLEWL MGAPAGLKMN KALDQVLGRF FLYHIHLWIS 360
  361 YIHLMSPFIE RILWYVGLSA CLGLTFALSI LSDIVALLTF HIYCFYVYGA RLYCLKIYGL 420
  421 SSLWRLFRGK KWNVLRQRVD SCSYDLDQLF IGTLLFTILL FLLPTTALYY LVFTLLRLVV 480
  481 VLFQGVIHLS VDFINSFPLF AIGLRICRPY RLAEGVKFKV LCEESGSPLH LMMEINPLKC 540
  541 SSVLQRYRTP TYSCYPKDSW AALCKKLFVG ELIYPWKQKT DKTD

Type	Start	End	Confidence
Cytoplasmic	1	210	0.79
Transmembrane Helix	211	230	0.89
Non-Cytoplasmic	231	280	0.75
Transmembrane Helix	281	300	0.95
Cytoplasmic	301	371	0.77
Transmembrane Helix	372	396	0.84
Non-Cytoplasmic	397	406	0.56
Transmembrane Helix	407	427	0.78
Cytoplasmic	428	448	0.88
Transmembrane Helix	449	472	0.87
Non-Cytoplasmic	473	480	0.72
Transmembrane Helix	481	504	0.78
Cytoplasmic	505	584	0.93