YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30354589, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHHTASDC KHKASSNAGG SVSGNGRPNS PAGCSGGGLS GGLTQPAGWQ SLLSLTILFL  60
   61 AWLAGFSSRL FAVIRFESII HEFDPWFNYR STHHLTTNGF YEFLNWFDER AWYPLGRIVG 120
  121 GTVYPGLMVT AGLIRYVLNL LHVTVHIRDV CVFLAPVFSG LTAISTFLLT RELWNQGAGL 180
  181 LAACFIAIVP GYISRSVAGS FDNEGIAIFA LQFTYYLWVK SVKTGSEKRQ ETEQEVCLAV 240
  241 ECEC

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.58
Transmembrane Helix	47	73	0.76
Cytoplasmic	74	114	0.60
Transmembrane Helix	115	138	0.84
Non-Cytoplasmic	139	144	0.53
Transmembrane Helix	145	169	0.82
Cytoplasmic	170	176	0.44
Transmembrane Helix	177	194	0.92
Non-Cytoplasmic	195	204	0.42
Transmembrane Helix	205	219	0.47
Cytoplasmic	220	244	0.78