YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46090793
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIEHTTVA TNGINMHVAS IGTGPAVLFI HGFPELWYSW RNQLLYLSSR GYRAIAPDLR  60
   61 GYGDTDAPPS VTSYTALHLV GDLIGLLDKL GIHQVFLVGH DWGALIAWYF CLFRPDRVKA 120
  121 LVNMSVPFPP RNPAVRPLNN FRAVYGDDYY ICRFQEPGEI EEEFAQIDTA RLMKKFLCLR 180
  181 IPKPLCIPKD TGLSTLPDPS ALPSWLSEED VNYYASKFNQ KGFTGPVNYY RCWDLNWELM 240
  241 APWTGVQIKV PVKYIVGDQD LVYNNKGTKE YIHNGGFKKY VPYLQDVVVM EGVAHFINQE 300
  301 KAEEVGAHIY EFIKKF

Type	Start	End	Confidence
Cytoplasmic	1	12	0.77
Transmembrane Helix	13	33	0.80
Non-Cytoplasmic	34	91	0.92
Transmembrane Helix	92	112	0.57
Cytoplasmic	113	316	0.62