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Protein Overview: gi|30682917

General Information:
Name(s) found: gi|30682917 [NCBI NR]
Description(s) found:
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  • gi|30682917|ref|NP_850071.1| nucleotidyltransferase family protein [Arabidopsis thaliana] [NCBI NR]
  • nucleotidyltransferase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nucleotidyltransferase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nucleotidyltransferase family protein | chr2:11033126-11037518 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleic acid binding / nucleotidyltransferase/ polynucleotide adenylyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026048-11030440 REVERSE LENGTH=787 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of O82312, Isoform 3 of Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 787 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE  60
   61 TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI FTFGSYRLGV HGPMADIDTL 120
  121 CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL 180
  181 VIPQDLDISN SSVLCDVDEQ TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV 240
  241 YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS 300
  301 FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ 360
  361 HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES RFRQLTLKIE RDTNGMLMCH 420
  421 PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD 480
  481 VHVSHVRRRQ LPSFVFPNGY KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI 540
  541 MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL 600
  601 PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS 660
  661 ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV DEVEREAKLG EIAGGVLWNG 720
  721 HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR 780
  781 LSLKSVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..537] PSI-BLAST 1000.0 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
    2 View Details [538..635] deduced N/A No confident structure predictions are available.
    3 View Details [636..787] MSA 5.220992 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.122769147009 bayes_pls_golite062009
  • RNA binding
    		•  1.07207584601969 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.92178707322923 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  0.911825870004661 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.667889614569279 bayes_pls_golite062009
  • transferase activity
    		•  0.63270331673446 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle