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Protein Overview: gi|42570131

General Information:
Name(s) found: gi|42570131 [NCBI NR]
Description(s) found:
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  • gi|42570131|ref|NP_849343.2| ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding [Arabidopsis thaliana] [NCBI NR]
  • oxysterol-binding family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Oxysterol-binding family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | oxysterol-binding family protein | chr4:5169724-5173357 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • oxysterol binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ORP1C | OSBP(oxysterol binding protein)-related protein 1C | chr4:5169727-5173360 FORWARD LENGTH=813 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • OSBP(Oxysterol binding protein)-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q8L751, OSBP(Oxysterol binding protein)-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 813 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN  60
   61 LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND IVGNGIAGIL YKWVNYGRGW 120
  121 RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR 180
  181 RKPFGEVHLK VSSVRESRSD DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM 240
  241 SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL 300
  301 LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SGTATESDDD NERGDAAEEE 360
  361 FDEEENTFFD TRDFLSSSSF KSSGSGFRTS SFSSDEDGFE SEDDIDPSIK SIGCNYPRVK 420
  421 RRKNLPDPVE KEKSVSLWSM IKDNIGKDLT KVCLPVYFNE PLSSLQKCFE DLEYSYLLDR 480
  481 AFEYGKRGNS LMRILNVAAF AVSGYASTEG RICKPFNPLL GETYEADYPD KGLRFFSEKV 540
  541 SHHPMVVACH CDGTGWKFWG DSNLRSKFWG RSIQLDPVGV LTLQFDDGEI LQWSKVTTSI 600
  601 YNLILGKLYC DHYGTMRIEG SAEYSCKLKF KEQSIIDRNP HQVHGIVQNK SGKTVATMFG 660
  661 KWDESIHFVT GDCSGKGKLS EDMSGAQLLW KRSKPPGNAT KYNLTRFAIT LNELTPGLKE 720
  721 RLPPTDSRLR PDQRYLENGE FEMANTEKLR LEQRQRQARK MQERGWKPRW FMKEKGSESY 780
  781 RYKGGYWEAR EDGSWVDCPD IFGHIDSDQQ MIE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] PSI-BLAST 27.0 No description for 2r09A was found.
    2 View Details [243..413] deduced N/A No confident structure predictions are available.
    3 View Details [414..813] PSI-BLAST 53.39794 Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle