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Protein Overview: gi|209911468, gi...

General Information:
Name(s) found: gi|209918209 [NCBI NR]
gi|209911468 [NCBI NR]
Description(s) found:
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  • gi|209918209|ref|YP_002292293.1| outer membrane protein A [Escherichia coli SE11] [NCBI NR]
  • gi|209911468|dbj|BAG76542.1| outer membrane protein OmpA [Escherichia coli SE11] [NCBI NR]
    • Organism: Escherichia coli SE11
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTAIAIAV ALAGFATVAQ AAPKDNTWYT GAKLGWSQYH DTGFINNNGP THENQLGAGA  60
   61 FGGYQVNPYV GFEMGYDWLG RMPYKGSVEN GAYKAQGVQL TAKLGYPITD DLDIYTRLGG 120
  121 MVWRADTKSN VYGKNHDTGV SPVFAGGVEY AITPEIATRL EYQWTNNIGD AHTIGTRPDN 180
  181 GMLSLGVSYR FGQGEAAPVV APAPAPAPEV QTKHFTLKSD VLFNFNKATL KPEGQAALDQ 240
  241 LYSQLSNLDP KDGSVVVLGY TDRIGSDAYN QGLSERRAQS VVDYLISKGI PADKISARGM 300
  301 GESNPVTGNT CDNVKQRAAL IDCLAPDRRV EIEVKGIKDV VTQPQA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..206] PSI-BLAST 23.09691 Outer membrane protein A (OMPA) transmembrane domain
    2 View Details [207..346] PSI-BLAST 25.09691 Structure of the OmpA-like domain of RmpM from Neisseria meningitidis

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • porin activity
    		•  5.10991724700971 bayes_pls_golite062009
  • channel activity
    		•  4.78965126968592 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  4.78965126968592 bayes_pls_golite062009
  • wide pore channel activity
    		•  3.92328965238944 bayes_pls_golite062009
  • transporter activity
    		•  2.94995161862691 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.84443650880263 bayes_pls_golite062009
  • receptor activity
    		•  1.96745124806322 bayes_pls_golite062009
  • signal transducer activity
    		•  1.14131647544827 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.14131647544827 bayes_pls_golite062009
  • binding
    		•  0.881171786743586 bayes_pls_golite062009
  • protein binding
    		•  0.251915221742479 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.708705497872653 bayes_pls_golite062009
  • protein binding
    		•  0.0802304930997709 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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