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Protein Overview: gi|190407669

General Information:
Name(s) found: gi|190407669 [NCBI NR]
Description(s) found:
  • gi|190407669|gb|EDV10936.1| protein RDR1 [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 546 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPGSTALP HKRQRVRKAC VPCRERKRKC NGKSPCEMCV AYGYVCHYID GRVPSASPQV  60
   61 QQVGETSPDT ESRPFVLPGI HRNEQPQPIN TQNVTSQNIV DPTKSRYTIQ HSAVAFPRCL 120
  121 GLELRSTNPP RLHSFAWHCG IRPEENPNSH VLLSDLVTKE EYYRISKVYF SVVHPIFDVV 180
  181 NPEQLAKNVE KYWDGDVKTL EYGAVIAGVI ALGSFFMGSL GHPREMDIVQ YAKGILDDPT 240
  241 FSRIPTVEQV SAWVLRTIYL RATSRPHVAW LASCVTIHLS EAIGLHHEID REDIAISNNV 300
  301 PPKRTTVVSE HTRRLFWCAW SINTILSYDY GRSSVTLNRI TCKPVKETDG NFTAHLVALA 360
  361 HLIPQDSVNA NAAQLLQALA AVHESPNAHP FLSLTKGDIC LSLYRRLRLL NHILDKNVVL 420
  421 QIIDIGNTAL SAAYALVKLD QAWWNVLSTS FQYVCVLLAI DTPESLSHVA TAMKTLDNIT 480
  481 QILGTRIAFE AQKTAKLLLE DSMKKKRQEI QQLEQATHQR SNLETTHLLD IDWDALLDPS 540
  541 DTLNFM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] PSI-BLAST 36.0 PUT3
    2 View Details [100..546] MSA 9.232982 View MSA. No confident structure predictions are available.
    3 View Details [223..351] Pfam 19.568636 No description for PF04082.9 was found. No confident structure predictions are available.
    4 View Details [352..546] MSA 4.393996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.36540182658818 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.82012686871762 bayes_pls_golite062009
  • DNA binding
    		•  1.78629392205727 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.70162817919532 bayes_pls_golite062009
  • transcription factor activity
    		•  0.606922041618269 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.160255273911114 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0882387940255902 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle