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Protein Overview: gi|15451046, gi|...

General Information:
Name(s) found: gi|18416114 [NCBI NR]
gi|15451046 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|18416114|ref|NP_568220.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15451046|gb|AAK96794.1| splicing factor-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: mRNA processing [IEA]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA][ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFDEYEYLE KTVEEGAGSN KKKEESGNER SERSYRKREG GERQGEEGGE EERVSSRSKK  60
   61 SRGDGEENGG GKRDRERERH RSSRDKDRER DKVREGSRDK ESDRERSSKE RDRSDRDKPR 120
  121 DRERREREKR SSSRSRREEK EPEVVERGSR RHRDKKDEPE ADPERDQRTV FAYQMPLKAT 180
  181 ERDVYEFFSK AGKVRDVRLI MDRNSRRSKG VGYIEFYDVM SVPMAIALSG QLFLGQPVMV 240
  241 KPSEAEKNLA QSNSTTVGGT GPADRKLYVG NLHFNMSELQ LRQIFEAFGP VELVQLPLDP 300
  301 ETGQCKGFGF IQFVQLEHSK AAQIALNGKL EIAGRTIKVS SVSDHIGTQD SAPKSADFDD 360
  361 DDGGGLALNA QSRAMLMQKL DRSGIATSIV GSLGVPGLNG AAFNQPGMNP SFPTSVLPTT 420
  421 AIPSFVNEHV GLPSECLLLK NMFDPATETE PNFDLEIRDD VADECSKYGP VNHIYVDKNS 480
  481 AGFVYLRFQS VEAAAAAQRA MHMRWFAQKM ISATFMPPHE YEAKAKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] FFAS03 1.14 crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
    2 View Details [158..347] PSI-BLAST 38.154902 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    3 View Details [348..436] deduced N/A No confident structure predictions are available.
    4 View Details [437..527] PSI-BLAST 17.69897 No description for 2d9pA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.425042944899091 bayes_pls_golite062009
  • transporter activity
    		•  0.417047632648771 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.288834004308736 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.288804044686487 bayes_pls_golite062009
  • snoRNA binding
    		•  0.0568636182001701 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00171911393626201 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle