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Protein Overview: gi|168238161, gi...

General Information:
Name(s) found: gi|197288985 [NCBI NR]
gi|168238161 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|197288985|gb|EDY28356.1| bifunctional protein HldE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] [NCBI NR]
  • gi|168238161|ref|ZP_02663219.1| bifunctional protein HldE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVNLPAFER AGVMVVGDVM LDRYWYGPTC RISPEAPVPV VKVNTVEERP GGAANVAMNI  60
   61 ASLGANARLV GLTGIDDAAR ALSKTLAEVN VKCDFVSVPT HPTITKLRVL SRNQQLIRLD 120
  121 FEEGFEGVDP QPLHERINQA LGSIGALVLS DYAKGALTSV QTMISLARQA GVPVLIDPKG 180
  181 TDFERYRGAT LLTPNLSEFE AVAGKCKSED ELVERGMKLI ADYDLSALLV TRSEQGMTLL 240
  241 QPNKAPLHMP TQAQEVYDVT GAGDTVIGVL AATLAAGNTL EEACYFANAA AGVVVGKLGT 300
  301 STVSPIELEN AVRGRADTGF GVMTEEELRQ AVASARKRGE KVVMTNGVFD ILHAGHVSYL 360
  361 ANARKLGDRL IVAVNSDAST KRLKGESRPV NPLEQRMIVL GALESVDWVV SFEEDTPQRL 420
  421 IAGILPDLLV KGGDYKPEEI AGSEEVWANG GEVMVLNFED GCSTTNIIKK IQTESEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..319] PSI-BLAST 45.30103 Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution
    2 View Details [320..477] PSI-BLAST 27.522879 CTP:glycerol-3-phosphate cytidylyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribokinase activity
    		•  4.25786236481087 bayes_pls_golite062009
  • catalytic activity
    		•  2.11518580948187 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  1.99025603598964 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.69918601153494 bayes_pls_golite062009
  • transferase activity
    		•  1.65599843675995 bayes_pls_golite062009
  • kinase activity
    		•  1.6060752218324 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.143446029424335 bayes_pls_golite062009
  • phosphofructokinase activity
    		•  0.0784945911925501 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  2.74718220535323 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  2.19141941108903 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  2.19141941108903 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  2.17852738923841 bayes_pls_golite062009
  • ligase activity
    		•  1.15322915814026 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle