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Protein Overview: gi|221230003, gi...

General Information:
Name(s) found: gi|221230003 [NCBI NR]
gi|219933110 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|221230003|ref|YP_002503419.1| ECF subfamily sigma subunit [Mycobacterium leprae Br4923] [NCBI NR]
  • gi|219933110|emb|CAR71171.1| ECF subfamily sigma subunit [Mycobacterium leprae Br4923] [NCBI NR]
    • Organism: Mycobacterium leprae Br4923
    Length: 263 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDGIGMERE GRWTGNTQCP LRVVPGDESP TLDGRASPED LIITNLLSPT IMSHPPPSRD  60
   61 DDWVEPFDAL QGTAVFDATG DKATMPSWEE LVRQHAARVY WLAYRLSGNQ HDAEDLTQET 120
  121 FIRVFRSVQN YQPGTFEGWL HRITTNLFLD MVRRRARIRM DALPDDYDRV PADEPNPEQI 180
  181 YHDSRLGPDL QAALDSLPPE FRAAVVLCDI EGLSYEEIGA TLGVKLGTVR SRIHRGRQAL 240
  241 RDYLLTAHPR DGATTDATHV KSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] PSI-BLAST 13.30103 Sigma factor SigA
    2 View Details [80..263] PSI-BLAST 27.39794 SigmaE factor (RpoE)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  1.02634976114785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle