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Protein Overview: gi|220948160

General Information:
Name(s) found: gi|220948160 [NCBI NR]
Description(s) found:
  • gi|220948160|gb|ACL86623.1| SNF4Agamma-PC [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 906 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGITHLYRQ HAVEKQLSGG ESWSRQIYPS YGSSADASSQ GSRLYSVDSS SSSSSNSNNS  60
   61 GGGGSGTAGV ENLGGVTGSA YAQWQSDRHS LPQAVPDAPR SLANHHYRNS PTHQAHYQQP 120
  121 TSGSLKRTPS SKRSFLERSH SPAIYGSMRR SAGPDFGSPP PTAPVGGGGY FPHDLDDIYE 180
  181 SQTDHQYFTH TGASGPQQQR PTAISIFHRV SAAHTSLDDY TLPGDASRQS MNSTDSGVSS 240
  241 GPFNRQRFDN SSFAKSLSID EQDPQHSPHK EGHSKHGKHH HHHSHHHHSI HELVKHFGKK 300
  301 MHLWPRKHHD AQSVCTSPQN DPQENFRTRS KSLDVNTLSR PNRILDDCGA TYKIYDRIVK 360
  361 EGAHMRRASA DLEKRRASVG AAGRGLRGDG TLDPHHAAIL FRDSRGLPVA DPFLEKVNLS 420
  421 DLEEDDSQIF VKFFRFHKCY DLIPTSAKLV VFDTQLLVKK AFYALVYNGV RAAPLWDSEK 480
  481 QQFVGMLTIT DFIKILQMYY KSPNASMEQL EEHKLDTWRS VLHNQVMPLV SIGPDASLYD 540
  541 AIKILIHSRI HRLPVIDPAT GNVLYILTHK RILRFLFLYI NELPKPAYMQ KSLRELKIGT 600
  601 YNNIETADET TSIITALKKF VERRVSALPL VDSDGRLVDI YAKFDVINLA AEKTYNDLDV 660
  661 SLRKANEHRN EWFEGVQKCN LDESLYTIME RIVRAEVHRL VVVDENRKVI GIISLSDILL 720
  721 YLVLRPSGEG VGGSESSLRA SDPVLLRKVA EVEIPATAAA ATTTTPPRSP SAGSGNRSLI 780
  781 EDIPEEETAP ARSDDADSDN NKSASEDKAN NNQHDQTTTA ATANGDSNNS PVEVSFADEA 840
  841 QEEEAADQVE RSNCDDDDQP ALAEIERKNA SMDDDEDDGM SSAVSAASAL GQSLTPAAQE 900
  901 MALVSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..215] deduced N/A No confident structure predictions are available.
    2 View Details [216..312] deduced N/A No confident structure predictions are available.
    3 View Details [313..412] MSA 1.166991 View MSA. No confident structure predictions are available.
    4 View Details [413..533] PSI-BLAST 51.39794 No description for 2v8qE was found.
    5 View Details [534..582] FFAS03 2.65 Crystal structure of CBS domain-containing predicted protein (TM0935) from Thermotoga maritima at 1.87 A resolution
    6 View Details [583..714] PSI-BLAST 22.045757 No description for 2uv4A was found.
    7 View Details [715..906] PSI-BLAST 19.522879 Inosine monophosphate dehydrogenase (IMPDH)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • phosphorylase kinase regulator activity
    		•  7.70391834244316 bayes_pls_golite062009
  • AMP-activated protein kinase activity
    		•  7.44642435115105 bayes_pls_golite062009
  • cAMP-dependent protein kinase inhibitor activity
    		•  6.93689873566354 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  2.56838904228494 bayes_pls_golite062009
  • protein kinase activity
    		•  2.52567871323046 bayes_pls_golite062009
  • kinase activity
    		•  2.4422214009645 bayes_pls_golite062009
  • cAMP-dependent protein kinase regulator activity
    		•  2.35874140792742 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.34602478412267 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  2.17402447573866 bayes_pls_golite062009
  • transferase activity
    		•  1.64817967293013 bayes_pls_golite062009
  • binding
    		•  1.63354691422982 bayes_pls_golite062009
  • protein binding
    		•  1.38803085961368 bayes_pls_golite062009
  • protein kinase binding
    		•  1.35253529418057 bayes_pls_golite062009
  • kinase binding
    		•  1.3320291155323 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  1.31002370375073 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.26281943988481 bayes_pls_golite062009
  • ion channel activity
    		•  0.956667854360503 bayes_pls_golite062009
  • channel activity
    		•  0.940842319076591 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.940842319076591 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.929686668465826 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  0.889901921302766 bayes_pls_golite062009
  • gated channel activity
    		•  0.736786411102643 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.709718817747483 bayes_pls_golite062009
  • enzyme binding
    		•  0.263336937308997 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  0.254655971647361 bayes_pls_golite062009
  • kinase regulator activity
    		•  0.22192900867037 bayes_pls_golite062009
  • catalytic activity
    		•  0.205284274859133 bayes_pls_golite062009
  • PDZ domain binding
    		•  0.0288055199494393 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  0.00255895098457382 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle