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Protein Overview: gi|241934501, gi...

General Information:
Name(s) found: gi|242066762 [NCBI NR]
gi|241934501 [NCBI NR]
Description(s) found:
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  • gi|242066762|ref|XP_002454670.1| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor] [NCBI NR]
  • gi|241934501|gb|EES07646.1| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor] [NCBI NR]
    • Organism: Sorghum bicolor
    Length: 426 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPEPEDDIM NEKNPRPLDE DDIALLKTYG LGPYSTSIKK VEKEIKEMAK KINDLCGIKE  60
   61 SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTD DAKYVINVKQ IAKFVVGLGD 120
  121 KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM 180
  181 REVVELPMLH PEKFVKLGID PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ 240
  241 KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD 300
  301 GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD 360
  361 IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK DFLDAVNKVI KGYQKFSATP 420
  421 KYMVYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..426] PSI-BLAST 72.522879 VCP/p97

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  4.71605970197038 bayes_pls_golite062009
  • peptidase activity
    		•  3.6994352506738 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.52737232558306 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.48761031707503 bayes_pls_golite062009
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•  2.97654163768625 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.95079405147356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.87427509025394 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.85499564954033 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.85178667290149 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.82708337557815 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.73258998901465 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  2.62447832211895 bayes_pls_golite062009
  • motor activity
    		•  2.60481158518321 bayes_pls_golite062009
  • transporter activity
    		•  2.58140740499725 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.55141814687566 bayes_pls_golite062009
  • microtubule motor activity
    		•  2.4749473285311 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.39695871109024 bayes_pls_golite062009
  • ATPase activity
    		•  2.39535714892224 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  2.34560197109168 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.18396165590908 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  1.93945622138684 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.63387464349089 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.50574672650697 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  1.40218617756729 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.29730375126024 bayes_pls_golite062009
  • microfilament motor activity
    		•  1.28029120876672 bayes_pls_golite062009
  • potassium channel activity
    		•  1.25325326058348 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  1.23813846876459 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  1.2328838184594 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.901460716954519 bayes_pls_golite062009
  • actin binding
    		•  0.875514430441177 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  0.638370793401149 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of ions
    		•  0.600852003734846 bayes_pls_golite062009
  • transition metal ion transmembrane transporter activity
    		•  0.540220352687624 bayes_pls_golite062009
  • protein transporter activity
    		•  0.498432226280822 bayes_pls_golite062009
  • DNA binding
    		•  0.479412476059825 bayes_pls_golite062009
  • GTPase activity
    		•  0.437665353870877 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.434775387083003 bayes_pls_golite062009
  • ATP binding
    		•  0.41092997612902 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.385813421701492 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.377870145186619 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.312171320541728 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.294474570607914 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.282352478532746 bayes_pls_golite062009
  • tubulin binding
    		•  0.264882086048416 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.220608508617331 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.219533217661421 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.219157471322311 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.208665086324262 bayes_pls_golite062009
  • cation channel activity
    		•  0.192467810264152 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • microtubule binding
    		•  0.156470772916507 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle