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Protein Overview: gi|26451586, gi|...

General Information:
Name(s) found: gi|7486540 [NCBI NR]
gi|3193319 [NCBI NR]
gi|28973257 [NCBI NR]
gi|26451586 [NCBI NR]
gi|18411256 [NCBI NR]
Description(s) found:
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  • pir||T01352 hypothetical protein F6N15.2 - Arabidopsis thaliana [NCBI NR]
  • gi|3193319|gb|AAC19301.1| contains similarity to mouse brain protein E46 (GB:X61506) [Arabidopsis thaliana] [NCBI NR]
  • gi|28973257|gb|AAO63953.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26451586|dbj|BAC42890.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18411256|ref|NP_567156.1| MEE50 (maternal effect embryo arrest 50); binding [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|28973257|gb|AAO63953.1| unknown protein [Arabidopsis thaliana]gi|7486540|pir||T01352 hypothetical protein F6N15.2 - Arabidopsis thalianagi|3193319|gb|AAC19301.1| contains similarity to mouse brain protein E46 (G [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ataxin-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MEE50 | MEE50 (maternal effect embryo arrest 50); binding | chr4:97528-99050 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • contains similarity to mouse brain protein E46 (GB:X61506) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MEE50 | ARM repeat superfamily protein | chr4:97528-99050 FORWARD LENGTH=475 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F6N15.2 protein OS=Arabidopsis thaliana GN=F6N15.2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 475 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP  60
   61 YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD LLDSAIADFE TVRFGLQVLA 120
  121 NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG 180
  181 LTIIAETLRT SSSVGSVEDY WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV 240
  241 RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV 300
  301 IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS 360
  361 SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG LFLMLQQCVT DDENPFLREW 420
  421 GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..475] FFAS03 3.52 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.267627928716605 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle