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Protein Overview: DRB4_ARATH

General Information:
Name(s) found: DRB4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|42572769|ref|NP_974480.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22331912|ref|NP_191839.2| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|42572769|ref|NP_974480.1| double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]gi|22331912|ref|NP_191839.2| double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Double-stranded RNA-binding domain (DsRBD)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: DRB4 | DRB4 (double-stranded RNA-binding domain (DsRBD)-containing protein 4); double-stranded RNA binding | chr3:23236724-23238138 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • double-stranded RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: DRB4 | double-stranded-RNA-binding protein 4 | chr3:23225749-23227163 REVERSE LENGTH=355 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 355 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: production of ta-siRNAs involved in RNA interference [IMP]
    Molecular Function: protein binding [IPI]
    double-stranded RNA binding [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE  60
   61 HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF YATATSGPSH APTFTSTVEF 120
  121 AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI 180
  181 HSQPSSKVVM TPDTPSKGIK VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT 240
  241 TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV 300
  301 DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] PSI-BLAST 30.0 RNase III endonuclease catalytic domain; RNase III, C-terminal domain
    2 View Details [80..355] PSI-BLAST 20.522879 No description for 2yt4A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle