YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: EG10415

General Information:
Name(s) found: greA / EG10415 [EcoGene]
Description(s) found:
Found 6 descriptions.
SHOW ALL
  • transcript cleavage factor / Transcript cleavage factor [EcoGene]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 158 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: transcription [IEA]
    regulation of transcription, DNA-dependent [IEA]
    Molecular Function: DNA binding [IEA]
    transcription elongation regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAIPMTLRG AEKLREELDF LKSVRRPEII AAIAEAREHG DLKENAEYHA AREQQGFCEG  60
   61 RIKDIEAKLS NAQVIDVTKM PNNGRVIFGA TVTVLNLDSD EEQTYRIVGD DEADFKQNLI 120
  121 SVNSPIARGL IGKEEDDVVV IKTPGGEVEF EVIKVEYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 56.69897 GREA TRANSCRIPT CLEAVAGE FACTOR FROM ESCHERICHIA COLI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription elongation regulator activity
    		•  3.29955078032206 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.60774059975688 bayes_pls_golite062009
  • binding
    		•  0.991817203637246 bayes_pls_golite062009
  • catalytic activity
    		•  0.885282592863018 bayes_pls_golite062009
  • peptidyl-prolyl cis-trans isomerase activity
    		•  0.749323709309751 bayes_pls_golite062009
  • cis-trans isomerase activity
    		•  0.682910915659374 bayes_pls_golite062009
  • isomerase activity
    		•  0.273471323955819 bayes_pls_golite062009
  • protein binding
    		•  0.0371998661994551 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle