YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|16804579

General Information:
Name(s) found: gi|16804579 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|16804579|ref|NP_466064.1| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e] [NCBI NR]
    • Organism: Listeria monocytogenes EGD-e
    Length: 345 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTIHWNINK QQSNQAIFQE AAKLLQGGEC VAFPTETVYG LGADATNQAA VQKIYEAKGR  60
   61 PSDNPLIVHI ARREQMDQFV ASYPAKAIQL MEKFWPGPLT VILPLKKDSL ATNVSAGLST 120
  121 VGVRMPEHPV SLALIGTANI PIAAPSANRS GKPSPTTASH VIEDLDGKIA GIIDGGATGV 180
  181 GLESTVIDCS LEIPIILRPG GVTKEQIEQI IGPVDISTNN TKETEKPKAP GMKYTHYAPK 240
  241 APVYLIEGST QFWQSEINKA EAANKKLGIL ATKELINQLN TSGTIETTGS IKALDEIATS 300
  301 LYKGLRAFDH ADVDIIFAEV YPETELGAAI MNRLEKAAGN RRITE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 63.69897 Hypothetical protein YciO
    2 View Details [215..345] PSI-BLAST 19.09691 No description for 2yv4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • telomeric DNA binding
    		•  2.58217232196133 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  1.94245361512193 bayes_pls_golite062009
  • binding
    		•  1.44524229223398 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15094304608167 bayes_pls_golite062009
  • DNA binding
    		•  0.99027678526068 bayes_pls_golite062009
  • RNA binding
    		•  0.63108051002538 bayes_pls_golite062009
  • catalytic activity
    		•  0.343636936190038 bayes_pls_golite062009
  • protein binding
    		•  0.207821310455625 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0989469098854212 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle