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Protein Overview: gi|24054654, gi|...

General Information:
Name(s) found: gi|24115350 [NCBI NR]
gi|24054654 [NCBI NR]
Description(s) found:
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  • ref|NP_709860.1| ssDNA-binding protein [Shigella flexneri 2a str. 301] [NCBI NR]
  • gb|AAN45567.1| ssDNA-binding protein [Shigella flexneri 2a str. 301] [NCBI NR]
  • ssDNA-binding protein [Shigella flexneri 2a str. 301]gi|24054654|gb|AAN45567.1| ssDNA-binding protein [Shigella flexneri 2a str. 301] [nrdb_11152004_Chlamydomonas]
    • Organism: Shigella flexneri 2a str. 301
    Length: 199 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMVQSRVYT YSERFFSGDT NMASRGVNKV ILVGNLGQDP EVRYMPNGGA VANITLATSE  60
   61 SWRDKATGEM KEQTEWHRVV LFGKLAEVAS EYLRKGSQVY IEGQLRTRKW TDQSGQDRYT 120
  121 TEVVVNVGGT MQMLGGRQGG GAPAGGNIGG GQPQGGWGQP QQPQGGNQFS GGAQSRPQQS 180
  181 APAAPSNEPP MDFDDDIPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] PSI-BLAST 58.39794 SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.65948797337693 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.38758756313423 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.30327082958682 bayes_pls_golite062009
  • binding
    		•  0.902189695502298 bayes_pls_golite062009
  • DNA binding
    		•  0.9001707539121 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle