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Protein Overview: gi|24347165, gi|...

General Information:
Name(s) found: gi|24373006 [NCBI NR]
gi|24347165 [NCBI NR]
Description(s) found:
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  • gi|24373006|ref|NP_717048.1| outer membrane protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347165|gb|AAN54493.1|AE015587_2 outer membrane protein [Shewanella oneidensis MR-1] [NCBI NR]
  • outer membrane protein [Shewanella oneidensis MR-1]gi|24347165|gb|AAN54493.1| outer membrane protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • outer membrane protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 662 amino acids

    Gene Ontology:
    Cellular Component: cell outer membrane [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKLNIITL GLLAATSGVS AADFSVHKAN LQGLKLDAYQ CKSCIGEKRY QGELQLSAGW  60
   61 AENDDIHAGN AFGDASDGMR AAMDADVRYR NAGYEANVQA YQLGLENSYA HLDAGRSGQY 120
  121 ALNLDYQLLT RYDSRAQTQL WHNNGVLLPD TATRDVDLQL EREKVGLGLA AQYGVMQAFI 180
  181 NYDHEQKTGN RRSSLVTPRP VNFALPVDAN TENLNAGLNI SGENWLSELA YHGSFYRNNI 240
  241 DNLSLPYLPD VYAATPDNDA HQVSLSGQYM LGRGTVNGRV AAGRMLQDGD LIQVSGNPLQ 300
  301 SWDAQVDTLD ARLGFSNMLS PRWRVNGQVD YSERDNKSSV WEFAQLEFDN VSGAFKQNVP 360
  361 MDIERLTYKL HSSYRFNSQY RLMGGYDRKE VERSYLEREQ THDDAFWAKL NIRALPNTVI 420
  421 DFGGRYENRS GSVYNAVENT SIEENPLLRK FYLADRERQA VELKANYVPL SWLTLDLNGY 480
  481 YAKDDYAKTI IGLTESTDYG YDLQLGMQLS EQLHLYASAS QQWIDSAIAG SQSFSSPDWY 540
  541 SDIADEFINL GAGFTYSGLL DDRLTLGGNY LFSNSASDSL ISYNEVQPYG DYYSYNHSVE 600
  601 LYGRYALSER MGLKLSYQYE RYYDTDYSQS AVNSIPGLIT LGDLNHNYNA HLLMFTFSYL 660
  661 LP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..511] PSI-BLAST 37.69897 Ferric hydroxamate uptake receptor FhuA
    2 View Details [512..662] PSI-BLAST 13.0 Outer membrane transporter FecA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  1.53359142384353 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.109053674865783 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle