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Protein Overview: SYM_SHEON

General Information:
Name(s) found: SYM_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24374161|ref|NP_718204.1| methionyl-tRNA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348665|gb|AAN55648.1|AE015703_10 methionyl-tRNA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • Methionine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=metG PE=3 SV=1 [Swiss-Prot]
  • methionyl-tRNA synthetase [Shewanella oneidensis MR-1]gi|24348665|gb|AAN55648.1| methionyl-tRNA synthetase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • methionyl-tRNA synthetase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 676 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: methionyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: methionine-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSQRKILV TSALPYANGP IHLGHMLEYI QTDIWSRYQK LRGHECHYIC ADDAHGTPIM  60
   61 LKAQQLGMAP EEMIAQVNKE HQQDFADFNI AFDNYHSTHS EENRVLASDI YLKLRANGYI 120
  121 KSKSISQLFD PEQSMFLPDR FVKGTCPKCK SPDQYGDNCD ACGATYSPTE LINPKSAVSG 180
  181 ATPVMKDTEH FFFDLPAFED MLKEWTRSGA LQTEMANKLD EWFEQGLQQW DITRDAPYFG 240
  241 FEIPDAPGKY FYVWLDAPIG YMGSFKNLCD KRPELSFDEF WAKDSKAEVY HFIGKDIVYF 300
  301 HSLFWPAMLY GSGYRQPNSV YAHGYVTVNG AKMSKSKGTF IKARTYLDHL DPEYLRYYYA 360
  361 AKLSSRIDDL DLNLEDFAQR VNSDLVGKLV NLASRTAGFI TKRFDGKLAK ITDTTLTEVF 420
  421 LAKQEQIAEF YETREYGKAM REIMALADIA NGFVADAAPW QMVKHDDQQE AAHQVCSNAL 480
  481 NLFRILVTYL KPVLPRLAQD VEAFFQQTLT WDGLGQDMAG HEIAPFKAMM QRVELDKVNA 540
  541 MVADSKENLQ ATTEPEAPKG PLATDPISDT INYEDFAKID LRIARIVKAE HVAEADKLLK 600
  601 LQLDIGGETR QVFAGIKSAY SPEDLEGKLT VMVANLAPRK MRFGMSEGMV LAAGPGGSDL 660
  661 WILEPHEGAQ PGMRVK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 116.0 Methionyl-tRNA synthetase (MetRS); Methionyl-tRNA synthetase (MetRS), Zn-domain
    2 View Details [88..676] PSI-BLAST 74.69897 Valyl-tRNA synthetase (ValRS) C-terminal domain; Valyl-tRNA synthetase (ValRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  5.54691369460949 bayes_pls_golite062009
  • valine-tRNA ligase activity
    		•  2.76211928339998 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • leucine-tRNA ligase activity
    		•  2.62601062778624 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  2.06526306263547 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.50161401062914 bayes_pls_golite062009
  • binding
    		•  1.25484337880125 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.06540031996204 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.06535308346284 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.55

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle