YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24349795, gi|...

General Information:
Name(s) found: gi|24375049 [NCBI NR]
gi|24349795 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|24375049|ref|NP_719092.1| OmpA family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349795|gb|AAN56536.1|AE015790_7 OmpA family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • OmpA family protein [Shewanella oneidensis MR-1]gi|24349795|gb|AAN56536.1| OmpA family protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • OmpA family protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: cell outer membrane [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEKMMKNT LKVVLLTSML PLAASASQEL TPWYVGAGLG VNNYEHIATD NGDDNPYAWD  60
   61 IFAGYMFNDY FGAEIGYRDL GSADWTTGGI SNDAGVKGAT LGLVGVWPLG NRWSLSAEAG 120
  121 AMYYTLENSQ HTGTTSSSYS SNDFAPYVGA GVGYNFTDNL KLQAKYRRYE NLDDTDFNTI 180
  181 EADSNYWGLE LSYRFGTPAA AAPVAAAVVA AAPVDSDNDG VYDDKDECPA TPATHKVDSV 240
  241 GCTLYENVKK QEDVGSIQFA NDSAVVKKEY YKDIERLANY MNKNPEFTVE IAGHASNVGK 300
  301 PEYNMVLSDK RADAVAKILV EKYGISQSRV TSNGYGITKP LVAGNSKEAH AANRRIEAIV 360
  361 TTTEKQPVLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..220] PSI-BLAST 25.69897 Outer membrane protein A (OMPA) transmembrane domain
    2 View Details [221..370] PSI-BLAST 24.0 No description for 2hqsH was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • porin activity
    		•  5.10991724700971 bayes_pls_golite062009
  • channel activity
    		•  4.78965126968592 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  4.78965126968592 bayes_pls_golite062009
  • wide pore channel activity
    		•  3.92328965238944 bayes_pls_golite062009
  • transporter activity
    		•  2.94995161862691 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.84443650880263 bayes_pls_golite062009
  • receptor activity
    		•  1.96745124806322 bayes_pls_golite062009
  • signal transducer activity
    		•  1.14131647544827 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.14131647544827 bayes_pls_golite062009
  • binding
    		•  0.881171786743586 bayes_pls_golite062009
  • protein binding
    		•  0.251915221742479 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle